Practical lab 1: chIP_seq data - GREAT and MEME-chIP.Module 4: In-depth Analysis of Networks and Pathways.Step 5 - Step through notebook to run the analysis.Create your first notebook using Docker.Set Up - Option 2 - Docker image with R/Rstudio.Exercise 4 (Optional) - Explore results in GeneMANIA or STRING. Exercise 2 - Post analysis (add drug target gene-sets to the network).Exercise 1 - GSEA output and EnrichmentMap.Exercise 1c (optional) - investigate individual pathways in GeneMANIA or String.Exercise 1c - create EM from results using Baderlab genesets.Exercise 1b - Is specifying the gmt file important?.Exercise 1a - compare different gprofiler geneset size results.Module 3: Network Visualization and Analysis with Cytoscape.Module 2: Finding Over-represented Pathways (Veronique Voisin).Module 1 - Introduction to Pathway and Network Analysis (Gary Bader).Pre-Workshop Materials and Laptop Setup Instructions.Pathway and Network Analysis of -Omics Data ( May 2021 ).
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